Milk kefir grains have a well-deserved reputation: they are robust, generous and capable of multiplying as soon as they are given the right conditions. But ‘robust’ does not mean ‘indestructible’. As soon as you start making kefir on a regular basis, a question quickly arises: how do you store the grains between uses?
Sometimes it’s a voluntary break: holidays, travel, lack of time, a desire to slow down. Sometimes it’s an imposed break: too many grains, too much kefir to drink, or simply a lifestyle that doesn’t allow you to restart fermentation every day. And sometimes the question arises because you want to keep a ‘back-up’ culture, in case your daily routine goes off the rails.
Keeping grains in good condition is the difference between an easy restart (where you restart and everything is back on track in 1 or 2 cycles) and a messy restart (too strong an odour, irregular fermentation, kefir that is too acidic or too liquid, grains that seem to be slowing down, or even confusion over “are my grains still alive?)
In this article, we’re going to cover the subject in a comprehensive yet easy-to-apply way. We’ll cover :
- short shelf-life (24 to 72 hours)
- refrigerated storage (a break of a few days to a few weeks)
- longer shelf life (back-up solutions and limitations)
- restarting after a break (how to restart without stress)
- frequent errors (those that “damage” the grains)
- Signs that your grains are doing well
- and practical solutions if your kefir becomes too acidic, too liquid, or separates too quickly after a break
And if you like the world of home fermentations in the broadest sense, you’ll see that the logic of conservation (slowing down a living culture, then restarting it) is very similar in other fermentations, particularly kombucha. Many enthusiasts alternate between kefir and kombucha depending on the season. If you want to complete your routine, you can start a stable fermentation with our SCOBY Kombucha (natural authentic kombucha strain) – ideal for varying living drinks while keeping the method simple.
Short answer: the most reliable method = in the fridge, in milk, and renew according to the duration.
If you need to store your milk kefir grains between uses, the simplest and most reliable method is :
- place the seeds in a clean jar
- cover with milk (ideally whole milk)
- close with a lid (loosely if you prefer, but in the fridge it’s usually OK)
- place in the fridge to slow fermentation
Next, “good practice” depends on the amount of downtime:
- short pause (1 to 3 days): leave in the fridge, without touching, then start again
- medium pause (1 to 2 weeks): milk can be renewed once if necessary
- longer pause (beyond): the aim is a more structured strategy (and acceptance of recovery in several cycles)
But to really get it right, you need to understand what happens during the break.
Why grains need a “medium” even when they’re on pause
The seeds are not completely dormant
In the refrigerator, microbial activity slows down considerably, but does not stop at 100%. Lactic acid bacteria and yeast continue to slowly transform part of the lactose.
As a direct consequence, the milk in which the whey rests will ferment slowly. It can become more acidic, thicker and sometimes separate (whey + mass).
That’s not necessarily a problem. It’s perfectly normal. The aim is simply to prevent this slow fermentation going too far for too long, as a very acidic environment can stress certain grains.
Milk protects and nourishes
Milk is not just a preservative “layer”. It’s also :
- protection against drying out
- a supply of soft food
- a buffer that prevents sudden variations
- a familiar environment for culture
This is why preserving them in milk is generally more stable than improvised “dry” methods.
The 3 most common conservation scenarios
Scenario 1: very short break (less than 24 hours)
If you are taking a break of less than 24 hours (for example, you have already filtered and want to restart tomorrow), you can simply :
- keep the beans in a little milk at room temperature if the room is cool, or
- put in the fridge if you want to be sure of slowing down
In most kitchens, the fridge remains the safest option, especially if the ambient temperature is variable.
Scenario 2: break for a few days (2 to 7 days)
This is the most common case: weekends away, short trips, or just the need to take a breather.
Recommended method :
- grains + milk in a clean jar
- fridge
- on the way back: fresh milk
In this scenario, you generally don’t need to change the milk during the short break. The milk may become more acidic, which is normal. You discard it (or save it for culinary use if you like), then restart.
Scenario 3: break of one to several weeks
Here, we switch to ‘real conservation’. It works very well, but you need to pay more attention to two things:
- the acidity level of resting milk
- repeat cycles (often 1 to 3 cycles to obtain “perfect” kefir)
After a break of 2 to 3 weeks, some people renew the milk once along the way, especially if they want to avoid the environment becoming too acidic. Others don’t and then start again, accepting a more gradual resumption.
Both approaches can work. The idea is to choose a stable method for your routine.

Storing food in the fridge: detailed method (simple, but “clean”)
Choosing the right jar
A clean glass jar is ideal. It does not need to be sterilised like a medical instrument, but it must be :
- washed properly
- well rinsed (no washing-up liquid residues)
- no lingering odour
A residual odour is one of the classic causes of “bad recovery” that people attribute to the grains when the problem lies with the container.
How much milk should I use?
The aim is to cover grains comfortably.
You don’t need to fill the jar to the brim. But avoid filling it too small (the beans should be well submerged). A simple rule:
- at least 5 to 10 times the volume of the grains in milk
If you have a lot of beans, add more milk. If you don’t have much, a small amount is enough.
What type of milk should I use?
Whole milk is often the best choice for storage, as it offers :
- more fat (a more stable, “softer” environment)
- a more comfortable feeling of rest for the crop
Semi-skimmed works too. Skimmed is less ideal for a break, especially a long one.
At what fridge temperature?
The standard fridge is suitable. Avoid placing near an area that freezes (very cold bottom) if your fridge has extreme variations. A stable area is ideal.
Do I need to seal it?
In the fridge, fermentation is slow, so gas production is low. Many ferment with a normal lid, without any problems.
If you want an ultra-cautious approach: you can close loosely. But most of the time, a standard lid will suffice.
How long can it be kept without food?
3 days: generally no action required
Leave it alone for 3 days, then relaunch it. Simple.
1 week: still very often OK
A week in the fridge in milk is generally an easy break. You start again, sometimes doing 1 adaptation cycle if the first kefir is stronger or more liquid.
2 weeks: this is still common, but recovery may require 1-2 cycles
At this stage, the rest milk may be more acidic. It’s no big deal, but don’t judge your grains on the very first cycle after a long break.
3 to 4 weeks: possible, but allow for a gradual recovery
After 3 weeks, you enter a zone where the crop may be temporarily more ‘unbalanced’. It often recovers very well, but it’s reasonable to allow 2 to 3 cycles before returning to your ‘usual’ texture and taste.
What to do with the rest milk?
The easiest way: throw it away
Rest milk often tastes very fermented, sometimes too acidic. Many people throw it away, and that’s fine.
Kitchen option: use it if you like
Some people use it in cooking (marinades, pastes, sauces) as a very strong fermented milk. It’s a question of preference.
But if you’re sensitive to taste, don’t force yourself. The aim is to save your culture, not to impose a product you don’t like on you.
Recovery after conservation: the method that works in 95% of cases
Step 1: filter and top up with fresh milk
When you take the beans out of the fridge :
- filter the beans
- discard the resting milk (or set it aside if you like)
- restart immediately with fresh milk
That’s the basis.
Step 2: Run a shorter initial “adaptation” cycle
After a pause, the grains may ferment in a different way: sometimes slower, sometimes more acidic, sometimes more liquid.
A very effective approach is to make the first cycle a little shorter, then adjust afterwards. For example:
- if you usually ferment for 24 hours, ferment for 12 to 18 hours in the first cycle
- observe texture and smell
- then return to your standard routine
Step 3: Don’t judge in the first cycle
It’s important. Many people panic because the first kefir after the fridge is :
- too liquid
- or too acidic
- or with rapid separation
Often, the second cycle is already much better. The third is almost back to normal.
Fermentation is a balancing act. After a pause, the culture rebalances itself.
Common problems after a break (and solutions)
My kefir is too acidic after refrigeration
Common causes:
- resting milk is already very acidic
- you fermented too long in the first cycle
- you put a lot of grains in a little milk
Solutions:
- discard the resting milk (do not mix it with your “drinking” kefir)
- run a shorter cycle (filter before separation)
- reduce the amount of grain slightly if necessary
- put in the fridge quickly after filtration to stabilise the taste
My kefir is too liquid after refrigeration
Common causes:
- grains that are slowly recovering
- Lighter milk (semi-skimmed/skimmed)
- room temperature lower than usual
- grain dosage too low
Solutions:
- allow 1 to 2 cycles to return to normal
- use a richer milk to kick-start (whole milk)
- slightly increase the dosage of grains, or ferment a little longer
- after filtration, leave to rest for a few hours in the fridge: the texture often stabilises
My grains seem “tired” or ferment very slowly
Possible causes:
- long pause in a highly acidic environment
- low grain quantity, lack of relative “strength
- wide variations in temperature
Solutions:
- do 2 short cycles in a row with fresh milk
- avoid extreme acidity during recovery
- keep the same brand/type of milk for a few days
- ensure a stable temperature
In most cases, things get going again.
Resting milk smells strong: is this normal?
A stronger smell is common after a break. What counts is the nature of the smell:
- sour, fermented: often normal
- frankly “dirty”, rotten, chemical: here, hygiene and conditions need to be reviewed
If you have any doubts, the safest method is to filter the culture, top it up with fresh milk and observe its progress over 24 hours. A healthy culture often ‘corrects’ itself when it gets back into a stable routine.

Conservation and multiplication: what should you do if you have too many seeds?
Very often, the preservation issue arises because the grains multiply. You end up with too many grains for your usual volume of milk, and your kefir becomes too fast, too acidic, or separates too soon.
In this case, you have three options:
Option 1: reduce the amount of grain used
This is often the best option. You keep to your routine, but with fewer grains “in use”. The surplus can be kept in the fridge in milk as a reserve.
Option 2: Increase the volume of milk
If you consume more kefir, or cook with it, you can gradually increase your volume. But don’t force yourself to produce too much.
Option 3: Share or conserve differently
Sharing is classic. Alternatively, you can keep a small reserve in the fridge and maintain the rest as part of your routine.
The idea is to prevent your fermentation becoming “too violent” simply because your grain mass has doubled without you realising it.
Long-term storage: beyond the fridge (what you need to know)
Is it possible to keep them for a very long time without looking after them?
The longer the break, the further you move away from a ‘routine’ and the more patience you need to get back into it. Some people keep grains in the fridge for a long time, but this is not the most comfortable method if you want a quick and stable recovery.
If you are planning a long absence, the best strategy is often :
- fridge + milk, but accepting a repeat over several cycles
- or a long-term storage solution (freezing/drying) – which will be covered in another article in your series (since you also have a blog dedicated to freezing).
Here, we deliberately focus on “between-use” conservation using realistic, everyday methods.
The key point: conservation is “slowing down”, not stopping
The fridge doesn’t put the grains on “total pause”. It slows them down. So the ideal way to store grains is :
- slows down enough to avoid explosive fermentation
- feeds you enough to prevent exhaustion
- avoid an overly acidic environment for too long
- and makes for easy recovery
It’s exactly the same philosophy as with other living cultures. With kombucha, for example, we don’t ‘sterilise’, we balance. If you like to vary your fermentations, you can easily start another living drink with our SCOBY Kombucha (natural authentic kombucha strain) – a very simple way of adding a stable fermentation to your routine, without complicating your daily routine.
Ultra-simple “short break” routine (ready-to-use example)
You are leaving for 3 days
- filter your grains
- put them in a clean jar
- add whole milk (enough to cover most of the milk)
- fridge
- when you return, filter, discard the rest milk and restart a short fermentation process
- the next day, resume your normal routine
You leave for 7 days
Same routine. If you come back and the smell is very strong, don’t panic: repeat 1 or 2 short cycles.
You are leaving for 14 days
Same routine, but you can consider :
- add a little more milk
- or renew the milk once halfway through if possible (optional)
If that’s not possible, it’s not a big deal: you can restart on your return and accept a gradual resumption.
FAQ : Storing milk kefir grains between uses
How long can I leave my beans in the fridge without looking after them?
Many people leave them in for 1 to 2 weeks without any problems. After that, it’s possible, but it may take 2 to 3 cycles before the kefir tastes “as usual” again.
Do I need to change the milk during storage?
For a short break (a few days), no. For a break of several weeks, it’s optional. If you can do it easily, it can limit the acidity of the environment. Otherwise, you can start again when you return.
Do I need to rinse my beans after refrigeration?
In general, no. Filtering and rinsing is enough. If the grains are stuck in a very curdled mass, gently ‘loosening’ with a little fresh milk is often preferable to rinsing with water.
Why is my first kefir after the fridge weird?
Because the crop is rebalancing. The cold slows down, the environment sometimes becomes more acidic, and the recovery may give a different result to the first cycle. The second and third cycles often return to normal.
My beans have a strong smell after storage. Is this normal?
A stronger fermented smell may be normal. If the smell is really unpleasant and persistent, check the jar and hygiene and do 1 or 2 short cycles with fresh milk.
Can I keep my grains at room temperature if I take a break?
This is not ideal, unless you take a very short break in a cool room. At room temperature, fermentation continues rapidly, and the environment becomes very acidic, which can make some grains tired.
Should I feed my grains during a break?
In the fridge, milk serves as slow food. You don’t need to ‘feed’ anything else. If the break is long, refilling the milk once can help, but it’s not compulsory.
How do you store surplus grain?
You can keep a ‘reserve’ in the fridge in milk, and use only part of it for your daily routine. This prevents the milk from fermenting too quickly.
Conclusion: simple conservation means easy recovery
Storing kefir grains between uses doesn’t have to be complicated. The most reliable method is to store them in the fridge, in milk, in a clean jar. For a few days, it’s almost automatic. For one to several weeks, it’s also possible, as long as you accept that it may take 1 to 3 cycles to get back to your ideal kefir.
If your kefir is too acidic after the pause, shorten the first cycle and stabilise in the refrigerator. If it’s too liquid, start again with a richer milk, leave 1 to 2 cycles, and adjust gently. Kefir is a living thing: it rebalances itself, especially when you put it back into a stable routine.
And if you like this ‘controlled fermentation’ approach, you can also vary your living drinks at home. Many people complement kefir with kombucha, because the rhythms and tastes are different, but the logic remains the same. You can start simply with our SCOBY Kombucha (a natural, authentic strain of kombucha) to kick-start stable, regular fermentation.